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metformin is a very common drug, it is used to help regulate insulin. PCOS affects how you body deals with insulin, you may or may not have diabetes if they prescribe it for you although it is considered a diabetic drug. it will help regulate your blood sugars, help you loose weight, which in turn helps you ovulate.
clomid simply stimulates egg production.
i was given clomid for two series of attempts (6 months each) with no luck, although my friend who also has PCOS got pregnant with twins on her second month on it.
my doctor later gave me metformin and and after a year and loosing 10 lbs we got pregnant spontaneously (we had been trying for 6.5 years in total but most people don't take so long.)
they may give you both, i've heard good things about the combo. but it really depends on what is hindering conception.
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